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  <body>
    <div class="header">
      <div id="header_title"> <img src="http://www.transcriptome.ens.fr/aozan/images/logo_aozan_qc.png"
          alt="Aozan"> &nbsp;&nbsp;Quality report on run
        140906_SNL110_0185_AH0EYHADXX <span id="data_simulated">(Simulated Data)</span>
      </div>
      <div id="header_filename"> Generated Tue 9 Sep 2014<br>
       <a href="#global">Global</a> / <a href="#lane">Lanes</a> / <a href="#project">Projects</a> / <a href="#sample">Samples</a> </div>
    </div>
    <div class="report">
      <ul>
        <li> <b>Run Id: </b>140906_SNL110_0185_AH0EYHADXX</li>
        <li> <b>Flow cell: </b>H0EYHADXX</li>
        <li> <b>Run started: </b>Tue 5 mars 2015</li>
        <li> <b>Instrument S/N: </b>SNL110</li>
        <li> <b>Instrument run number: </b>85</li>
        <li> <b>Generated by: </b>Aozan version 1.4 (revision version_commit)</li>
        <li> <b>Creation date: </b>Tue 5 mars 2015</li>
      </ul>

      <a name="global"/>
		<h2>Global report</h2>
		<table class="data">
		<tr>
		<th>Raw Clusters Est.</th>
		<th>PF Clusters Est.</th>
		<th>Base count (Gb)</th>
		<th>Non indexed base count (Gb)</th>
		<th>Raw Clusters Mean Est.</th>
		<th>Raw Clusters Mediane Est.</th>
		<th>Raw Clusters SD Est.</th>
		<th>PhiX Align Est. (%)</th>
		<th>PF Clusters Mean Est.</th>
		<th>PF Clusters Mediane Est.</th>
		<th>PF Clusters SD Est.</th>
		<th>PhiX Raw Clusters Est.</th>
		<th>PhiX Raw Clusters Mean Est.</th>
		<th>PhiX Raw Clusters Mediane Est.</th>
		<th>PhiX Raw Clusters SD Est.</th>
		<th>PF Clusters Est. (%)</th>
		<th>Cycles Count.</th>
		<th>Lane Count.</th>
		<th>Undetermined Cluster Est. (%)</th>
		<th>Samples Count.</th>
		<th>Projects Count.</th>
		</tr>
		<tr>
		<td class="score-1">415 633 216</td>
		<td class="score-1">180 691 136</td>
		<td class="score-1">24.11</td>
		<td class="score-1">21.20</td>
		<td class="score-1">207 816 576</td>
		<td class="score-1">207 816 576</td>
		<td class="score-1">418 432</td>
		<td class="score0">3.08%</td>
		<td class="score-1">90 345 536</td>
		<td class="score-1">90 345 536</td>
		<td class="score-1">2 621 760</td>
		<td class="score-1">12 801 344</td>
		<td class="score-1">6 400 640</td>
		<td class="score-1">6 400 640</td>
		<td class="score-1">203 200</td>
		<td class="score0">43.47%</td>
		<td class="score-1">58</td>
		<td class="score-1">2</td>
		<td class="score-1">68.71%</td>
		<td class="score-1">8</td>
		<td class="score-1">1</td>
		</tr>
		</table>



      <a name="lane"></a>
      <h2>Lanes Quality report</h2>
      <h3>Read 1 (51 cycles)</h3>
      <table class="data">
        <tbody>
          <tr>
            <th>Lane</th>
            <th>Raw Clusters Est.</th>
            <th>PF Clusters Est.</th>
            <th>PF Clusters (%)</th>
            <th>Cluster Density (k/mm2)</th>
            <th>PhiX Align (%)</th>
            <th>Error Rate (%)</th>
            <th>Error Rate 35 cycles (%)</th>
            <th>Error Rate 75 cycles (%)</th>
            <th>Error Rate 100 cycles (%)</th>
            <th>First cyle intensity</th>
            <th>Intensity cycle 20 (%)</th>
            <th>Phasing / Prephasing</th>
          </tr>
          <tr>
            <td>1</td>
            <td class="score-1">93 405 568</td>
            <td class="score-1">90 700 352</td>
            <td class="score9">97.10%</td>
            <td class="score-1">506.76</td>
            <td class="score-1">67.14%</td>
            <td class="score-1">0.09%</td>
            <td class="score9">0.08%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.00%</td>
            <td class="score-1">7 494</td>
            <td class="score9">84.00%</td>
            <td class="score9">0.112% / 0.128%</td>
          </tr>
          <tr>
            <td>2</td>
            <td class="score-1">96 437 504</td>
            <td class="score-1">93 413 120</td>
            <td class="score9">96.86%</td>
            <td class="score-1">523.21</td>
            <td class="score-1">67.17%</td>
            <td class="score-1">0.11%</td>
            <td class="score9">0.10%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.00%</td>
            <td class="score-1">7 561</td>
            <td class="score9">84.76%</td>
            <td class="score9">0.115% / 0.124%</td>
          </tr>
        </tbody>
      </table>
      <h3>Read 2 (7 cycles, index)</h3>
      <table>
        <tbody>
          <tr>
            <th>Lane</th>
            <th>Raw Clusters Est.</th>
            <th>PF Clusters Est.</th>
            <th>PF Clusters (%)</th>
            <th>Cluster Density (k/mm2)</th>
            <th>PhiX Align (%)</th>
            <th>Error Rate (%)</th>
            <th>Error Rate 35 cycles (%)</th>
            <th>Error Rate 75 cycles (%)</th>
            <th>Error Rate 100 cycles (%)</th>
            <th>First cyle intensity</th>
            <th>Intensity cycle 20 (%)</th>
            <th>Phasing / Prephasing</th>
          </tr>
          <tr>
            <td>1</td>
            <td class="score-1">93 405 568</td>
            <td class="score-1">90 700 352</td>
            <td class="score-1">97.10%</td>
            <td class="score-1">506.76</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">2 630</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.000% / 0.000%</td>
          </tr>
          <tr>
            <td>2</td>
            <td class="score-1">96 437 504</td>
            <td class="score-1">93 413 120</td>
            <td class="score-1">96.86%</td>
            <td class="score-1">523.21</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">2 650</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.000% / 0.000%</td>
          </tr>
        </tbody>
      </table>

      <a name="project"/>
		<div>
		<h4>Filter by projects</h4>
		<table id="filterProject">
		<tr>
		<td>
		<a href="javascript:void(0);" class="linkFilterActivate" onclick="window.location.reload(true);">ALL</a>
		</td>
		<td>
		<a class="linkFilterInactivate" href="javascript:void(0);" onclick="javascript:filterRow(['Project_name_1'], this);">Project_name_1</a>
		</td>
		<td>
		<a class="linkFilterInactivate" href="javascript:void(0);" onclick="javascript:filterRow(['Project_name_2'], this);">Project_name_2</a>
		</td>
		<td>
		<a class="linkFilterInactivate" href="javascript:void(0);" onclick="javascript:filterRow(['Project_name_3'], this);">Project_name_3</a>
		</td>
		<td>
		<a class="linkFilterInactivate" href="javascript:void(0);" onclick="javascript:filterRow(['Undetermined'], this);">Undetermined</a>
		</td>
		</tr>
		</table>

		<a id="project"></a>
          <h2>Projects statistics report</h2>
          <table class="projectstat">
          <tr>
          <th>Project</th><th>Samples count</th><th>Genome(s)</th><th>Lane(s)</th><th>Is indexed</th><th>Raw clusters min</th><th>Recoverable raw cluster (%)</th><th>Sample(s) exceeded contamination threshold</th><th>FastqScreen report</th>
          </tr>
          <tr>
          <td class="Project_name_1">Project_name_1</td><td class="score-1">2</td><td class="score-1">hg19</td><td class="score-1">1</td><td class="score-1">true</td><td class="score-1">23 547 544</td><td class="score-1">12.32%</td><td class="score-1">0</td><td class="score9"><a href="quality_control_example_project/Project_name_1-fastqscreen.html">link</a></td>
          </tr>
          <tr>
          <td class="Project_name_2">Project_name_2</td><td class="score-1">2</td><td class="score-1">R norvegicus</td><td class="score-1">1</td><td class="score-1">true</td><td class="score-1">17 317 392</td><td class="score-1">3.45%</td><td class="score-1">3</td><td class="score9"><a href="quality_control_example_project/Project_name_1-fastqscreen.html">link</a></td>
          </tr>
          <tr>
          <td class="Project_name_3">Project_name_3</td><td class="score-1">2</td><td class="score-1">mm10</td><td class="score-1">2</td><td class="score-1">true</td><td class="score-1">42 548 227</td><td class="score-1">10.19%</td><td class="score-1">2</td><td class="score9"><a href="quality_control_example_project/Project_name_1-fastqscreen.html">link</a></td>
          </tr>
          </table>

      <a name="sample"></a>
      <h2>Samples Quality report</h2>
      <h3>Read 1</h3>
      <table class="sampleData">
        <tbody>
          <tr class="headerColumns">
            <th>Lane</th>
           <th>Sample name</th>
			<th>Description</th>
			<th>Index</th>
			<th>Project</th>
			<th>Raw_clusters</th>
			<th>PF_clusters</th>
			<th>Passing filter (%)</th>
			<th>Sample in lane (%)</th>
			<th>&gt;= Q30 Base PF (%)</th>
			<th>Mean quality score base PF</th>
			<th>Recoverable PF clusters</th>
			<th>link report recovery cluster</th>
			<th>Basic Stats</th>
			<th>Per base quality scores</th>
			<th>Per tile sequence quality</th>
			<th>Per sequence quality scores</th>
			<th>Per base sequence content</th>
			<th>Per sequence GC content</th>
			<th>N Content</th>
			<th>Sequence length distribution</th>
			<th>Duplication level</th>
			<th>Over represented seqs</th>
			<th>Adapter content</th>
			<th>kmer content</th>
			<th>Bad tiles</th>
			<th>fastqScreen mapped except genome sample (%)</th>
			<th>fastqscreen mapped on adapters (%)</th>
			<th>fastqscreen mapped on lsuref (%)</th>
			<th>fastqscreen mapped on ssuref (%)</th>
			<th>fastqscreen mapped on phix (%)</th>
			<th>fastqscreen single mapped on hg19 (%)</th>
			<th>fastqscreen single mapped on mm10 (%)</th>
			<th>link report fastqScreen</th>
			<th>Sample name</th>
          </tr>
          <tr class="Project_name_1">
            <td>1</td>
            <td>2013_0001</td>
            <td>description</td>
            <td>ATCACG</td>
            <td>Project_name_1</td>
            <td class="score-1">23 547 544</td>
            <td class="score9">22 928 389</td>
            <td class="score9">97.37%</td>
            <td class="score-1">25.21%</td>
            <td class="score9">98.92%</td>
            <td class="score-1">39.09</td>
            <td class="score9">155 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>

            <td class="score9">5.54%</td>
            <td class="score9">3.10%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.87%</td>
            <td class="score9">1.70%</td>
            <td class="score9">65.40%</td>
            <td>NA</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0001<br>
              Project_name_1</td>
          </tr>
          <tr class="Project_name_1">
            <td>1</td>
            <td>2013_0002</td>
            <td>description</td>
            <td>CGATGT</td>
            <td>Project_name_1</td>
            <td class="score-1">24 640 389</td>
            <td class="score9">23 667 093</td>
            <td class="score9">96.05%<br>
            </td>
            <td class="score-1">26.38%</td>
            <td class="score9">99.30%</td>
            <td class="score-1">39.32</td>
            <td class="score9">65 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>

            <td class="score9">1.01%</td>
            <td class="score9">0.52%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.41%</td>
            <td class="score9">0.12%</td>
            <td class="score9">69.42%</td>
            <td>NA</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0002<br>
              Project_name_1</td>
          </tr>
          <tr class="Project_name_2">
            <td>1</td>
            <td>2013_0003</td>
            <td>description</td>
            <td>TTAGGC</td>
            <td>Project_name_2</td>
            <td class="score-1">17 317 392</td>
            <td class="score9">16 922 556</td>
            <td class="score9">97.72%</td>
            <td class="score-1">18.54%</td>
            <td class="score9">99.00%</td>
            <td class="score-1">39.13</td>
            <td class="score9">565 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>
            <td class="score9">2.93%</td>
            <td class="score9">0.59%</td>
            <td class="score9">0.01%</td>
            <td class="score9">0.96%</td>
            <td class="score9">1.51%</td>
            <td>NA</td>
            <td>NA</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0003<br>
              Project_name_2</td>
          </tr>
          <tr class="Project_name_2">
            <td>1</td>
            <td>2013_0004</td>
            <td>description</td>
            <td>TGACCA</td>
            <td>Project_name_2</td>
            <td class="score-1">20 894 826</td>
            <td class="score9">20 399 618</td>
            <td class="score9">97.63%</td>
            <td class="score-1">22.37%</td>
            <td class="score9">99.15%</td>
            <td class="score-1">39.22</td>
            <td class="score9">1 265 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>

            <td class="score9">2.54%</td>
            <td class="score9">2.28%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.22%</td>
            <td class="score9">0.07%</td>
            <td>NA</td>
            <td>NA</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0004<br>
              Project_name_2</td>
          </tr>
          <tr class="Undetermined">
            <td>1</td>
            <td>Undetermined</td>
            <td>No description</td>
            <td>Undetermined</td>
            <td>Undetermined</td>
            <td class="score-1">7 005 418</td>
            <td class="score-1">6 784 046</td>
            <td class="score-1">96.84%</td>
            <td class="score-1">7.50%</td>
            <td class="score-1">99.06%</td>
            <td class="score-1">39.16</td>
            <td class="score-1">65 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane2_Undetermined_L002_R1_001-potentialindices.html">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>
            <td class="score-1">0.97%</td>
            <td class="score-1">0.48%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.40%</td>
            <td class="score-1">0.14%</td>
            <td>NA</td>
            <td class="score-1">3.06%</td>
            <td class="score-1"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>

            <td class="repeat">Undetermined<br>
              Undetermined</td>
          </tr>
          <tr class="Project_name_3">
            <td>2</td>
            <td>2013_0005</td>
            <td>description</td>
            <td>ATCACG</td>
            <td>Project_name_3</td>
            <td class="score-1">50 494 677</td>
            <td class="score9">49 252 508</td>
            <td class="score9">97.23%</td>
            <td class="score-1">52.36%</td>
            <td class="score9">98.82%</td>
            <td class="score-1">39.05</td>
                        <td class="score9">45 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>

            <td class="score9">5.47%</td>
            <td class="score9">3.01%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.86%</td>
            <td class="score9">1.74%</td>
            <td>NA</td>
            <td class="score9">61.45%</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0005<br>
              Project_name_3</td>
          </tr>
          <tr class="Project_name_3">
            <td>2</td>
            <td>2013_0006</td>
            <td>description</td>
            <td>CGATGT</td>
            <td>Project_name_3</td>
            <td class="score-1">42 548 227</td>
            <td class="score9">40 901 610</td>
            <td class="score9">98.23%</td>
            <td class="score-1">44.12%</td>
            <td class="score9">99.23%</td>
            <td class="score-1">39.29</td>
                        <td class="score9">5 015</td>
<td class="score-1">
<a href="./quality_control_example_project/lane1-potentialindices.html">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score9">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score0">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score4">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>

            <td class="score9">0.97%</td>
            <td class="score9">0.48%</td>
            <td class="score9">0.00%</td>
            <td class="score9">0.40%</td>
            <td class="score9">0.14%</td>
            <td>NA</td>
            <td class="score9">58.16%</td>
            <td class="score9"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">2013_0006<br>
              Project_name_3</td>
          </tr>
          <tr class="Undetermined">
            <td>2</td>
            <td>Undetermined</td>
            <td>No description</td>
            <td>Undetermined</td>
            <td>Undetermined</td>
            <td class="score-1">3 394 600</td>
            <td class="score-1">3 277 826</td>
            <td class="score-1">96.56%</td>
            <td class="score-1">3.52%</td>
            <td class="score-1">98.96%</td>
            <td class="score-1">39.13</td>
            <td class="score-1">391 542</td>
           <td class="score-1">
<a href="./quality_control_example_project/lane2_Undetermined_L002_R1_001-potentialindices.html">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M0">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M1">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M2">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M3">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M5">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M6">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M7">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M8">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M9">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M10">link</a>
</td>
<td class="score-1">
<a href="./quality_control_example_project/fastqc_report.html#M11">link</a>
</td>
            <td class="score-1">0.97%</td>
            <td class="score-1">0.48%</td>
            <td class="score-1">0.00%</td>
            <td class="score-1">0.40%</td>
            <td class="score-1">0.14%</td>
            <td>NA</td>
            <td class="score-1">2.16%</td>
            <td class="score-1"><a href="./quality_control_example_project/2013_0001_ATCACG_L001_R1_001-fastqscreen.html">link</a></td>
            <td class="repeat">Undetermined<br>
              Undetermined</td>
          </tr>
          <tr>
            <td class="repeat">Lane</td>
            <td class="repeat">Sample name</td>
            <td class="repeat">Description</td>
            <td class="repeat">Index</td>
            <td class="repeat">Project</td>
            <td class="repeat">Raw clusters</td>
            <td class="repeat">PF clusters</td>
            <td class="repeat">Passing filter (%)</td>
            <td class="repeat">Sample in lane (%)</td>
            <td class="repeat">&gt;= Q30 Base PF (%)</td>
            <td class="repeat">Mean quality score base PF</td>
			<td class="repeat">Recoverable PF clusters</td>
			<td class="repeat">link report recovery cluster</td>
            <td class="repeat">Basic Stats</td>
            <td class="repeat">Per base quality scores</td>
			<td class="repeat">Per tile sequence quality</th>
            <td class="repeat">Per sequence quality scores</td>
            <td class="repeat">Per base sequence content</td>
			<td class="repeat">Adapter content</td>
            <td class="repeat">Per sequence GC content</td>
            <td class="repeat">N Content</td>
            <td class="repeat">Sequence length distribution</td>
            <td class="repeat">Duplication level</td>
            <td class="repeat">Over represented seqs</td>
            <td class="repeat">kmer content</td>
            <td class="repeat">Bad tiles</td>
            <td class="repeat">fastqScreen mapped except genome sample (%)</td>
            <td class="repeat">fastqscreen mapped on phix (%)</td>
            <td class="repeat">fastqscreen mapped on adapters (%)</td>
            <td class="repeat">fastqscreen mapped on lsuref (%)</td>
            <td class="repeat">fastqscreen mapped on ssuref (%)</td>
            <td class="repeat">fastqscreen uniq mapped on hg19 (%)</td>
            <td class="repeat">fastqscreen uniq mapped on mm10 (%)</td>
            <td class="repeat">link report fastqScreen</td>
            <td class="repeat">Sample_Project name</td>
          </tr>
        </tbody>
      </table>
      <p>&nbsp;</p>
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